{
  "_id": "6a100ad0acfb0bcc41c7f787",
  "Package": "BHMSMAfMRI",
  "Type": "Package",
  "Title": "Bayesian Hierarchical Multi-Subject Multiscale Analysis of\nFunctional MRI (fMRI) Data",
  "Version": "2.3",
  "Date": "2025-09-23",
  "Authors@R": "c(person(\"Nilotpal\", \"Sanyal\", role = c(\"aut\", \"cre\"), email = \"nilotpal.sanyal@gmail.com\", comment = c(ORCID = \"0000-0003-4814-7602\")), person(\"Marco A.R.\", \"Ferreira\", role = \"aut\"))",
  "Description": "Package BHMSMAfMRI performs Bayesian hierarchical\nmulti-subject multiscale analysis of fMRI data as described in\nSanyal & Ferreira (2012)\n<DOI:10.1016/j.neuroimage.2012.08.041>, or other multiscale\ndata, using wavelet-based prior that borrows strength across\nsubjects and provides posterior smoothed images of the effect\nsizes and samples from the posterior distribution.",
  "License": "GPL (>= 2)",
  "VignetteBuilder": "knitr",
  "URL": "https://nilotpalsanyal.github.io/BHMSMAfMRI/",
  "BugReports": "https://github.com/nilotpalsanyal/BHMSMAfMRI/issues",
  "Config/Needs/website": "rmarkdown",
  "Repository": "https://nilotpalsanyal.r-universe.dev",
  "Date/Publication": "2026-01-22 19:08:49 UTC",
  "RemoteUrl": "https://github.com/nilotpalsanyal/bhmsmafmri",
  "RemoteRef": "HEAD",
  "RemoteSha": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-22 07:45:12 UTC",
    "User": "root"
  },
  "Author": "Nilotpal Sanyal [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4814-7602>),\nMarco A.R. Ferreira [aut]",
  "Maintainer": "Nilotpal Sanyal <nilotpal.sanyal@gmail.com>",
  "MD5sum": "b050df554ee839d6f9f4cc154c6691fd",
  "_user": "nilotpalsanyal",
  "_type": "src",
  "_file": "BHMSMAfMRI_2.3.tar.gz",
  "_fileid": "f038c62b6311bc15893efb58e5be209f8f068cede86a8d5006132834c3afce9b",
  "_filesize": 951396,
  "_sha256": "f038c62b6311bc15893efb58e5be209f8f068cede86a8d5006132834c3afce9b",
  "_created": "2026-05-22T07:45:12.000Z",
  "_published": "2026-05-22T07:50:40.045Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77337941962,
      "time": 139,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7155444130"
    },
    {
      "job": 77337942054,
      "time": 159,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7155448910"
    },
    {
      "job": 77337942000,
      "time": 130,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7155441510"
    },
    {
      "job": 77337941972,
      "time": 126,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7155440477"
    },
    {
      "job": 77337941913,
      "time": 202,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7155450470"
    },
    {
      "job": 77337941920,
      "time": 230,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7155463837"
    },
    {
      "job": 77337941948,
      "time": 145,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7155439901"
    },
    {
      "job": 77337941928,
      "time": 278,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7155475987"
    },
    {
      "job": 77337531514,
      "time": 179,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155403368"
    },
    {
      "job": 77337941907,
      "time": 109,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155435112"
    },
    {
      "job": 77337941902,
      "time": 139,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7155443893"
    },
    {
      "job": 77337941918,
      "time": 126,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7155441890"
    },
    {
      "job": 77337941914,
      "time": 124,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7155439579"
    }
  ],
  "_buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/nilotpalsanyal/bhmsmafmri",
  "_commit": {
    "id": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
    "author": "BHMSMAfMRI <nilotpal.sanyal@gmail.com>",
    "committer": "BHMSMAfMRI <nilotpal.sanyal@gmail.com>",
    "message": "update\n",
    "time": 1769108929
  },
  "_maintainer": {
    "name": "Nilotpal Sanyal",
    "email": "nilotpal.sanyal@gmail.com",
    "login": "nilotpalsanyal",
    "description": "I'm an Assistant Professor at the Department of Mathematical Sciences at the University of Texas at El Paso. Find here a few R packages I've written.",
    "uuid": 21044798,
    "orcid": "0000-0003-4814-7602"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.9",
      "role": "Imports"
    },
    {
      "package": "oro.nifti",
      "role": "Imports"
    },
    {
      "package": "wavethresh",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "bookdown",
      "role": "Suggests"
    }
  ],
  "_owner": "nilotpalsanyal",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-04",
      "n": 2
    }
  ],
  "_tags": [],
  "_topics": [
    "bayesian-hierarchical-models",
    "fmri-data-analysis",
    "multiscale-data",
    "wavelet-transform",
    "openblas",
    "cpp",
    "openmp"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "nilotpalsanyal",
      "count": 50,
      "uuid": 21044798
    }
  ],
  "_userbio": {
    "uuid": 21044798,
    "type": "user",
    "name": "Nilotpal Sanyal",
    "description": "I'm an Assistant Professor at the Department of Mathematical Sciences at the University of Texas at El Paso. Find here a few R packages I've written."
  },
  "_downloads": {
    "count": 265,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BHMSMAfMRI"
  },
  "_devurl": "https://github.com/nilotpalsanyal/bhmsmafmri",
  "_pkgdown": "https://nilotpalsanyal.github.io/BHMSMAfMRI/",
  "_searchresults": 13,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BHMSMAfMRI.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/nilotpalsanyal/bhmsmafmri",
  "_realowner": "nilotpalsanyal",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2014-08-04"
    },
    {
      "version": "1.1",
      "date": "2017-05-05"
    },
    {
      "version": "1.2",
      "date": "2019-05-13"
    },
    {
      "version": "1.3",
      "date": "2019-05-16"
    },
    {
      "version": "2.0",
      "date": "2022-09-08"
    },
    {
      "version": "2.1",
      "date": "2022-10-02"
    },
    {
      "version": "2.2",
      "date": "2024-06-14"
    },
    {
      "version": "2.3",
      "date": "2025-09-23"
    }
  ],
  "_exports": [
    "BHMSMA",
    "glmcoef",
    "hyperparamest",
    "postglmcoef",
    "postgroupglmcoef",
    "postmixprob",
    "postsamples",
    "postwaveletcoef",
    "readfmridata",
    "substituteWaveletCoef",
    "waveletcoef"
  ],
  "_datasets": [
    {
      "name": "fmridata",
      "title": "A simulated fMRI data for 3 subjects",
      "object": "fmridata",
      "file": "fmridata.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "BHMSMAfMRI-package",
      "title": "Bayesian Hierarchical Multi-Subject Multiscale Analysis (BHMSMA) of Functional MRI Data",
      "topics": [
        "BHMSMAfMRI"
      ]
    },
    {
      "page": "BHMSMA",
      "title": "Bayesian hierarchical multi-subject multiscale analysis (BHMSMA) of functional MRI data or other multiscale data",
      "topics": [
        "BHMSMA"
      ]
    },
    {
      "page": "fmridata",
      "title": "A simulated fMRI data for 3 subjects",
      "topics": [
        "fmridata"
      ]
    },
    {
      "page": "glmcoef",
      "title": "Fit GLM (general linear model) to the fMRI time-series of all voxels within a single 2D brain slice",
      "topics": [
        "glmcoef"
      ]
    },
    {
      "page": "hyperparamest",
      "title": "Obtain estimates of the hyperparameters of the BHMSMA model",
      "topics": [
        "hyperparamest"
      ]
    },
    {
      "page": "postglmcoef",
      "title": "Obtain posterior estimate of a 2D GLM coefficients map of a regressor",
      "topics": [
        "postglmcoef"
      ]
    },
    {
      "page": "postgroupglmcoef",
      "title": "Obtain posterior group estimate of a 2D GLM coefficients map of a regressor",
      "topics": [
        "postgroupglmcoef"
      ]
    },
    {
      "page": "postmixprob",
      "title": "Obtain estimates of the mixture probabilities defining the BHMSMA posterior wavelet coefficients distributions",
      "topics": [
        "postmixprob"
      ]
    },
    {
      "page": "postsamples",
      "title": "Obtain samples from the posterior distribution of a 2D GLM coefficient map.",
      "topics": [
        "postsamples"
      ]
    },
    {
      "page": "postwaveletcoef",
      "title": "Obtain posterior estimates of the BHMSMA wavelet coefficients",
      "topics": [
        "postwaveletcoef"
      ]
    },
    {
      "page": "readfmridata",
      "title": "Import fMRI data from various fMRI image files",
      "topics": [
        "readfmridata"
      ]
    },
    {
      "page": "substituteWaveletCoef",
      "title": "Substitute 2D wavelet transform coefficients with user-given values",
      "topics": [
        "substituteWaveletCoef"
      ]
    },
    {
      "page": "waveletcoef",
      "title": "Apply discrete wavelet transform (DWT) to a 2D GLM coefficient map of a regressor",
      "topics": [
        "waveletcoef"
      ]
    }
  ],
  "_pkglogo": "https://github.com/nilotpalsanyal/bhmsmafmri/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/nilotpalsanyal/bhmsmafmri/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "bitops",
    "MASS",
    "oro.nifti",
    "Rcpp",
    "RcppArmadillo",
    "RNifti",
    "wavethresh"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 2.8129133566428557,
  "_indexed": true,
  "_nocasepkg": "bhmsmafmri",
  "_universes": [
    "nilotpalsanyal"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.3",
      "date": "2026-05-22T07:47:36.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "62194dfcdc37b091c1f3a5e76aafe0d90bf788948721b5751b0b2d7ea25c2601",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.3",
      "date": "2026-05-22T07:47:54.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "e568b4cce0f40408dca935fcf30e13f09e59bb97af1c8c113cdd06936f08ec3e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.3",
      "date": "2026-05-22T07:47:25.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "2fc39441026e89e615392a6c7ec6b32c9705759d376ffacb8d8bdb2fc7734027",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.3",
      "date": "2026-05-22T07:47:23.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "b39965e72a8595424b60427d85307c52ef02d5931d514af31dab80314a41e633",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.3",
      "date": "2026-05-22T07:47:56.000Z",
      "arch": "aarch64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "fc5587612754c77c4ba57c4b628166d8decf23f9bad1efaa2b79d14e1642e90e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.3",
      "date": "2026-05-22T07:48:34.000Z",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "237c83ed17cf2f53447d4a217ecd004ddbaf8fa43f334717a2b75ff86d3e3e84",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.3",
      "date": "2026-05-22T07:47:24.000Z",
      "arch": "aarch64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "b723ecb59eb59b88e80c93f4dc0fb5c298dcef99cc00836444d8802f76baa6ce",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.3",
      "date": "2026-05-22T07:49:01.000Z",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "1185e5ea314482272654b062f95c7a69d68f07f00e7a9c4b1046faee72180d69",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.3",
      "date": "2026-05-22T07:47:26.000Z",
      "arch": "emscripten",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "8395e917d067cd86ba2568a90b794af8ed29456e6c1a71be4814326f9de2f71a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.3",
      "date": "2026-05-22T07:47:03.000Z",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "f9077f7590a5b0bce88b7daf182c50f0a6be8caef174702e2e7e4f3ff8675481",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.3",
      "date": "2026-05-22T07:46:43.000Z",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "3be2802affbd738fcab58c6a42dd990b08387b6ce605131c52902301035841e7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.3",
      "date": "2026-05-22T07:46:42.000Z",
      "arch": "x86_64",
      "commit": "a1cc3423fd0a7ac3a62d9c2ceaf656d1a9935ff1",
      "fileid": "42c1726f5cbe207b0ab43f67d0ff4a0233b231ae211262ca10470d485c413895",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/nilotpalsanyal/actions/runs/26275142770"
    }
  ]
}